An additional thought: dead prey items can extremely quickly result in high ammonia levels, especially in aquaria with very little substrate for bacteria of the nitrogen cycle. Besides direct toxicity for the larvae, ammonia affects the skin and gills of your larvae, making them more vulnerable to, otherwise non-pathogenic bacteria. The problem is that, when one larva dies due to a septicemia, huge numbers of these bacteria will be present and the chance that other larvae will be affected increases greatly. I used to raise larvae using the same "clean" system: small containers without substrate and frequent water changes. However, I am convinced that using a more stable environment (larger volume of water, a large surface substrate) is highly beneficial. Therefore, nowadays I use large containers (approx 20 l) with a 5 cm substrate of coarse river sand and losses of larvae are really minimal.
Another thought: I know that it is written in all terrarium and aquarium literature that one should use "aged water", eg from tropical fish aquaria. There are some major drawbacks eg infections (notably very highly prevaling Mycobacterium and protozoan infections). I always use regular tap water that has been aerated for 48 h and this works really quite well.