Ok, so the Doctor is looking way better - the cloacal darkening/'scab'/whatever is gone. I'm still pulling a bit of 'fluff' off the cloaca (cotton swabs rock!) each day, but that seems to be diminishing too.
I pulled out the 'big camera' and tried getting some shots, because there are still little black/green/whatever dots just above the legs...
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You can see the cloacal bump, just behind the leg, and right above the front of it is a little black/green dot. This dot seems to accumulate fungus too, so I'm assuming it's related to whatever was going on with the cloaca - and since that issue seems to have cleared up, I'm hoping those leg spots will too.
There are also unfortunately a few red spots on the Doctor's tail, but I don't think they're anything serious:
Tail Dots
All in all, the Doctor is looking pretty good, I think - not as skinny as I felt before, but still pretty skinny, but the gills look great, and the color looks good.
I do see the tail curl here, but it's the first I've seen since being in the fridge, and I think it related more to the bright light, increasing temperature and annoying caretaker with a Q-Tip.
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PS: All photos have links to bigger versions, since some of the things are hard to see on these sizes.